selected publications
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article
- Exploring genomic feature selection: A comparative analysis of GWAS and machine learning algorithms in a large‐scale soybean dataset. The Plant Genome. 2025
- HaploVar: an R package for defining local haplotype variants for trait association and trait prediction analyses. Bioinformatics. 2025
- Adaptive gene loss in the common bean pan-genome during range expansion and domestication. Nature Communications. 2024
- Local haplotyping reveals insights into the genetic control of flowering time variation in wild and domesticated soybean. The Plant Genome. 2024
- Diversity of fatty acid biosynthesis genes across the soybean pangenome. The Plant Genome. 2023
- Legume‐wide comparative analysis of pod shatter locus PDH1 reveals phaseoloid specificity, high cowpea expression, and stress responsive genomic context. The Plant journal : for cell and molecular biology. 2023
- crosshap: R package for local haplotype visualization for trait association analysis. Bioinformatics. 2023
- Application of crop wild relatives in modern breeding. Frontiers in Plant Science. 2022
- Expanding Gene-Editing Potential in Crop Improvement with Pangenomes. International Journal of Molecular Sciences. 2022
- Genetic and Genomic Resources for Soybean Breeding Research. Plants (Basel, Switzerland). 2022
- Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003. Theoretical and Applied Genetics. 2022
- Isolation and Sequencing of Chromosome Arm 7RS of Rye, Secale cereale. International Journal of Molecular Sciences. 2022
- Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome. 2022
- Crop breeding for a changing climate: integrating phenomics and genomics with bioinformatics. Theoretical and Applied Genetics. 2021
- Plant pangenomics: approaches, applications and advancements. Current Opinion in Plant Biology. 2020
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chapter
- Local Haplotyping Analysis for Flowering Time in Soybean Using Crosshap. Legume Genomics. 2026
- An SGSGeneloss-Based Method for Constructing a Gene Presence-Absence Table Using Mosdepth. Plant Comparative Genomics. 2022
- Application of pangenomics for wheat molecular breeding. Molecular Breeding in Wheat, Maize and Sorghum. 2021
- High-Throughput Genotyping Technologies in Plant Taxonomy. Molecular Plant Taxonomy. 2021
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document