selected publications
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article
- Pangenomics in crop improvement—from coding structural variations to finding regulatory variants with pangenome graphs. Plant Genome. 2022
- Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids. Plant Biotechnology Journal. 2021
- Author Correction. Nature plants. 2020
- Pangenomics Comes of Age. Trends in Genetics. 2020
- Plant pan-genomes are the new reference. Nature plants. 2020
- Rice 3D chromatin structure correlates with sequence variation and meiotic recombination rate. Communications Biology. 2020
- Super-Pangenome by Integrating the Wild Side of a Species for Accelerated Crop Improvement. Trends in Plant Science. 2020
- Trait associations in the pangenome of pigeon pea (Cajanus cajan). Plant Biotechnology Journal. 2020
- Insight into the evolution and functional characteristics of the pan-genome assembly from sesame landraces and modern cultivars. Plant Biotechnology Journal. 2019
- Variation in abundance of predicted resistance genes in the Brassica oleracea pangenome. Plant Biotechnology Journal. 2019
- Genomic comparison of two independent seagrass lineages reveals habitat-driven convergent evolution. Journal of Experimental Botany. 2018
- Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus. Plant Biotechnology Journal. 2018
- Assembly and comparison of two closely related Brassica napus genomes. Plant Biotechnology Journal. 2017
- The pangenome of hexaploid bread wheat. Plant Journal. 2017
- An efficient approach to BAC based assembly of complex genomes. Plant Methods. 2016
- The emergence of molecular profiling and omics techniques in seagrass biology; furthering our understanding of seagrasses. Functional & Integrative Genomics. 2016
- The genome of a southern hemisphere seagrass species (Zostera muelleri). Plant Physiology. 2016
- The pangenome of an agronomically important crop plant Brassica oleracea. Nature Communications. 2016
- Towards plant pangenomics. Plant Biotechnology Journal. 2016
- Gene loss in the fungal canola pathogen Leptosphaeria maculans. Functional & Integrative Genomics. 2015
- Genome-wide survey of the seagrass Zostera muelleri suggests modification of the ethylene signalling network. Journal of Experimental Botany. 2015
- Skim-based genotyping by sequencing. Methods in Molecular Biology. 2015
- Early allopolyploid evolution in the post-neolithic Brassica napus oilseed genome. Science. 2014
- Characterising diversity in the Brassica genomes. Acta Horticulturae. 2013
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chapter
- An SGSGeneloss-Based Method for Constructing a Gene Presence-Absence Table Using Mosdepth. Plant Comparative Genomics. 2022
- Legume pangenome construction using an iterative mapping and assembly approach. Legume Genomics. 2020
- Method for Genome-Wide Association Study. Methods in Molecular Biology. 2020
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document
- The More the Merrier? Investigating Copy Number Variation in Brassica Disease Resistance. PAG ASIA 2016, Singapore, 6/06/16. 2016