selected publications
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article
- Pangenome Analysis of Plant Transcripts and Coding Sequences.. Methods in molecular biology (Clifton, N.J.). 2022
- GET_PHYLOMARKERS, a software package to select optimal orthologous clusters for phylogenomics and inferring pan-genome phylogenies, used for a critical geno-taxonomic revision of the genus Stenotrophomonas. Frontiers in Microbiology. 2018
- Analysis of plant pan-genomes and transcriptomes with GET_HOMOLOGUES-EST, a clustering solution for sequences of the same species. Frontiers in Plant Science. 2017
- GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis 2013
- primers4clades: A web server that uses phylogenetic trees to design lineage-specific PCR primers for metagenomic and diversity studies 2009
- Multilocus sequence analysis for assessment of the biogeography and evolutionary genetics of four Bradyrhizobium species that nodulate soybeans on the asiatic continent 2008
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book
- Pangenomic Analysis of theRhizobialesUsing the GET_HOMOLOGUES Software Package 2015
- Robust identification of orthologues and paralogues for microbial pan-genomics using GET_HOMOLOGUES: A case study of pIncA/C plasmids 2015
- Primers4clades: A Web Server to Design Lineage-Specific PCR Primers for Gene-Targeted Metagenomics 2011