selected publications
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article
- Genomics accelerated isolation of a new stem rust avirulence gene - wheat resistance gene pair. Nature plants. 2021
- The crystal structure of SnTox3 from the necrotrophic fungus Parastagonospora nodorum reveals a unique effector fold and provides insight into Snn3 recognition and pro-domain protease processing of fungal effectors. New Phytologist. 2021
- Distinct Life Histories Impact Dikaryotic Genome Evolution in the Rust Fungus Puccinia striiformis Causing Stripe Rust in Wheat.. Genome Biology and Evolution. 12:597-617. 2020
- Distinct life histories impact dikaryotic genome evolution in the rust fungus Puccinia striiformis causing stripe rust in wheat. bioRxiv. 859728. 2019
- Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation. Nature Communications. 10:5068. 2019
- Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation. bioRxiv. 692640. 2019
- The stem rust fungus Puccinia graminis f. sp. tritici induces waves of small RNAs with opposing profiles during wheat infection. bioRxiv. 469338. 2018
- A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity. Mbio. 9. 2018
- A near-complete haplotype-phased genome of the dikaryotic wheat stripe rust fungus puccinia striiformis f. Sp. tritici reveals high interhaplotype diversity. Mbio. 2018
- De novo assembly and phasing of dikaryotic genomes from two isolates of puccinia coronata f. Sp. avenae, the causal agent of oat crown rust. Mbio. 2018
- Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0. Molecular Plant Pathology. 2018
- Using virulence mutants to identify Avr genes in the wheat stem rust fungus, Puccinia graminis f. sp. tritici. Phytopathology. 2018
- Loss of AvrSr50 by somatic exchange in stem rust leads to virulence for Sr50 resistance in wheat. Science. 358:1607-1610. 2017
- A near complete haplotype-phased genome of the dikaryotic wheat stripe rust fungus Puccinia striiformis f. sp. tritici reveals high inter-haplome diversity. bioRxiv. 192435. 2017
- LOCALIZER: Subcellular localization prediction of both plant and effector proteins in the plant cell. Scientific Reports. 2017
- Loss of AvrSr50 by somatic exchange in stem rust leads to virulence for Sr50 resistance in wheat. Science. 2017
- Changing the game: Using integrative genomics to probe virulence mechanisms of the stem rust pathogen Puccinia graminis f. sp. tritici 2016
- EffectorP: Predicting fungal effector proteins from secretomes using machine learning 2016
- Advances and Challenges in Computational Prediction of Effectors from Plant Pathogenic Fungi. PLOS Pathogens. 2015
- Comparative genomics of australian isolates of the wheat stem rust pathogen puccinia graminis f. Sp. Tritici reveals extensive polymorphism in candidate effector genes 2015
- Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity. Genome Biology and Evolution. 2015
- Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors 2014
- A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi. BMC Genomics. 2013
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