selected publications
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article
- Predicting the complex structure and functional motions of the outer membrane transporter and signal transducer FecA.. Biophysical Journal. 2008
- Predicting the order in which contacts are broken during single molecule protein stretching experiments.. Proteins: Structure, Function and Genetics. 2008
- The ribosome structure controls and directs mRNA entry, translocation and exit dynamics.. Physical Biology. 2008
- Consensus data mining (CDM) protein secondary structure prediction server: Combining GOR V and fragment database mining (FDM). Bioinformatics. 2007
- Generation and enumeration of compact conformations on the two-dimensional triangular and three-dimensional fcc lattices.. Journal of Chemical Physics. 2007
- Monte Carlo simulations on nanoparticles in elastomers. Effects of the particles on the dimensions of the polymer chains and the mechanical properties of the networks. Macromolecular Symposia. 2007
- A DNA-centric look at protein-DNA complexes.. Structure. 2006
- A consensus data mining secondary structure prediction by combining GOR V and Fragment Database Mining. Protein Science. 2006
- Filler-induced deformations of amorphous polyethylene chains. the effects of the deformations on elastomeric properties, and some comparisons with experiments. European Polymer Journal. 2006
- Functional clustering of yeast proteins from the protein-protein interaction network.. BMC Bioinformatics. 2006
- Molecular modeling of matrix chain deformation in nanofiber filled composites. Colloid and Polymer Science. 2006
- The extent of cooperativity of protein motions observed with elastic network models is similar for atomic and coarser-grained models. Journal of Chemical Theory and Computation. 2006
- GOR V server for protein secondary structure prediction.. Bioinformatics. 2005
- Modeling the elastomeric properties of stereoregular polypropylenes in nanocomposites with spherical fillers 2005
- Prediction of protein secondary structure by mining structural fragment database. 2005
- Protein promiscuity: drug resistance and native functions--HIV-1 case.. Journal of Biomolecular Structure & Dynamics. 2005
- Some simulations on filler reinforcement in elastomers 2005
- The largest eigenvalue method for stereo-regular vinyl chains 2005
- Predicting binding sites of hydrolase-inhibitor complexes by combining several methods.. BMC Bioinformatics. 2004
- The transfer matrix method for lattice proteins—an application with cooperative interactions 2004
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