selected publications
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article
- A differential k-mer analysis pipeline for comparing RNA-Seq transcriptome and meta-transcriptome datasets without a reference. Functional & Integrative Genomics. 2019
- Identification and characterization of more than 4 million intervarietal SNPs across the group 7 chromosomes of bread wheat. Plant Biotechnology Journal. 2015
- Molecular Marker Databases. Methods in Molecular Biology. 2015
- A high-throughput SNP array in the amphidiploid species Brassica napus shows diversity in resistance genes. Functional & Integrative Genomics. 2014
- Characterising diversity in the Brassica genomes. Acta Horticulturae. 2013
- Dispersion and domestication shaped the genome of bread wheat. Plant Biotechnology Journal. 2013
- Identifying genetic diversity of avirulence genes in Leptosphaeria maculans using whole genome sequencing. Functional & Integrative Genomics. 2013
- Bioinformatics tools and databases for analysis of next-generation sequence data. Briefings in Functional Genomics. 2012
- Bread matters. Plant Biotechnology Journal. 2012
- Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP. Biology. 2012
- Genomic databases for crop improvement. Agronomy. 2012
- Identification and characterization of candidate Rlm4 blackleg resistance genes in Brassica napus using next-generation sequencing. Plant Biotechnology Journal. 2012
- Identification of systemic responses in soybean nodulation by xylem sap feeding and complete transcriptome sequencing reveal a novel component of the autoregulation pathway. Plant Biotechnology Journal. 2012
- Next-generation sequencing applications for wheat crop improvement. American Journal of Botany. 2012
- Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation. Theoretical and Applied Genetics. 2012
- Single nucleotide polymorphism discovery from wheat next-generation sequence data. Plant Biotechnology Journal. 2012
- Transient Nod factor-dependent gene expression in the nodulation-competent zone of soybean (Glycine max [L.] Merr.) roots. Plant Biotechnology Journal. 2012
- WheatGenome.info. Plant and Cell Physiology. 2012
- Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS. Plant Biotechnology Journal. 2011
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chapter
- Genomic databases for crop improvement. The role of bioinformatics in agriculture. 2014
- Role of Bioinformatics as a Tool for Oilseed Brassica Species. Genetics, Genomics and Breeding of Oilseed Brassicas. 2012