selected publications
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article
- A haplotype-resolved pangenome of the barley wild relative Hordeum bulbosum 2024
- De novo annotation of the wheat pan-genome reveals complexity and diversity of the hexaploid wheat pan-transcriptome 2024
- Fusarium Head Blight Resistance in European Winter Wheat: Insights From Genome-Wide Transcriptome Analysis 2021
- Merging Genomics and Transcriptomics for Predicting Fusarium Head Blight Resistance in Wheat.. Genes. 12:114. 2021
- Aegilops tauschii genome assembly Aet v5.0 features greater sequence contiguity and improved annotation. . G3 (Bethesda, Md.). 2021
- Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential. Nature Genetics. 2021
- De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time and Fusarium-Resistant Genes in East Asian Genotypes. Plant and Cell Physiology. 2021
- Fusarium head blight resistance in European winter wheat: insights from genome-wide transcriptome analysis. BMC Genomics. 2021
- Merging genomics and transcriptomics for predicting fusarium head blight resistance in wheat. Genes. 2021
- Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement. Nature Biotechnology. 2021
- De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time and Fusarium Resistance Genes in East Asian Genotypes.. Plant and Cell Physiology. 2020
- Multiple wheat genomes reveal global variation in modern breeding.. Nature. 588:277-283. 2020
- Multiple wheat genomes reveal global variation in modern breeding.. Nature. 588:277-283. 2020
- Current status of the multinational Arabidopsis community. Plant Direct. 2020
- The barley pan-genome reveals the hidden legacy of mutation breeding. Nature. 2020
- Durum wheat genome highlights past domestication signatures and future improvement targets. Nature Genetics. 51:885-895. 2019
- Durum wheat genome highlights past domestication signatures and future improvement targets. Nature Genetics. 2019
- Tracing the ancestry of modern bread wheats.. Nature Genetics. 2019
- Hidden variation in polyploid wheat drives local adaptation.. Genome Research. 28:1319-1332. 2018
- Chromosome-scale comparative sequence analysis unravels molecular mechanisms of genome dynamics between two wheat cultivars. Genome Biology. 19:104. 2018
- Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science. 361:7191. 2018
- The transcriptional landscape of polyploid wheat. Science. 361. 2018
- Genome mapping of seed-borne allergens and immunoresponsive proteins in wheat. Science Advances. 4. 2018
- Chromosome-scale comparative sequence analysis unravels molecular mechanisms of genome evolution between two wheat cultivars. bioRxiv. 260406. 2018
- Chromosome-scale comparative sequence analysis unravels molecular mechanisms of genome dynamics between two wheat cultivars. Genome Biology. 2018
- Hidden variation in polyploid wheat drives local adaptation.. Genome Research. 2018
- Shifting the limits in wheat research and breeding using a fully annotated reference genome.. Science. 2018
- The pseudogenes of barley. Plant Journal. 2018
- Epigenomic variation across a polyploid wheat diversity collection. bioRxiv. 217828. 2017
- Genome sequence of the progenitor of the wheat D genome Aegilops tauschii. Nature. 551:498-502. 2017
- Time-course expression QTL-atlas of the global transcriptional response of wheat to Fusarium graminearum.. Plant Biotechnology Journal. 15:1453-1464. 2017
- Wild emmer genome architecture and diversity elucidate wheat evolution and domestication.. Science. 357:93-97. 2017
- A chromosome conformation capture ordered sequence of the barley genome. Nature. 2017
- Time-course expression QTL-atlas of the global transcriptional response of wheat to Fusarium graminearum. Plant Biotechnology Journal. 2017
- Wild emmer genome architecture and diversity elucidate wheat evolution and domestication. Science. 2017
- TRANSCRIPTOME ANALYSIS OF 13 ELITE DURUM WHEAT VARIETIES SPANNING THE COMPLETE BREEDING ERA DECADES 2017
- Suppressed recombination and unique candidate genes in the divergent haplotype encoding Fhb1, a major Fusarium head blight resistance locus in wheat. Theoretical and Applied Genetics. 129:1607-1623. 2016
- Examining the Transcriptional Response in Wheat Fhb1 Near-Isogenic Lines to Fusarium graminearum Infection and Deoxynivalenol Treatment. The Plant Genome. 9. 2016
- Suppressed recombination and unique candidate genes in the divergent haplotype encoding Fhb1, a major Fusarium head blight resistance locus in wheat. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2016
- Chloroplast phylogeny of Triticum/Aegilops species is not incongruent with an ancient homoploid hybrid origin of the ancestor of the bread wheat D-genome.. New Phytologist. 2015
- High-throughput physical map anchoring via BAC-pool sequencing. 2015
- Joint transcriptomic and metabolomic analyses reveal changes in the primary metabolism and imbalances in the subgenome orchestration in the bread wheat molecular response to Fusarium graminearum. G3: Genes, Genomes, Genetics. 2015
- A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome.. Science. 2014
- A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms. Plant Physiology. 2014
- Ancient hybridizations among the ancestral genomes of bread wheat.. Science. 2014
- Genome interplay in the grain transcriptome of hexaploid bread wheat. Science. 2014
- Separating the wheat from the chaff - A strategy to utilize plant genetic resources from ex situ genebanks. Scientific Reports. 2014
- Slicing the wheat genome 2014
- Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature. 2013
- Quantitative trait loci-dependent analysis of a gene co-expression network associated with Fusarium head blight resistance in bread wheat (Triticum aestivum L.). BMC Genomics. 2013
- Sequence-Based Analysis of Translocations and Inversions in Bread Wheat (Triticum aestivum L.). PLOS ONE. 2013
- A physical, genetic and functional sequence assembly of the barley genome. Nature. 2012
- Integrating cereal genomics to support innovation in the Triticeae. Functional & Integrative Genomics. 2012
- Frequent Gene Movement and Pseudogene Evolution Is Common to the Large and Complex Genomes of Wheat, Barley, and Their Relatives. PLANT CELL. 2011
- Genome sequencing and analysis of the model grass Brachypodium distachyon.. Nature. 2010
- The Sorghum bicolor genome and the diversification of grasses. Nature. 2009
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