selected publications
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article
- Mapping bread wheat trait ontologies for semantic interoperability [version 1; peer review: awaiting peer review] 2024
- SyntenyViewer: a comparative genomics-driven translational research tool. Database. 2023
- Breeding for Economically and Environmentally Sustainable Wheat Varieties: An Integrated Approach from Genomics to Selection. Biology. 2022
- Capturing Wheat Phenotypes at the Genome Level.. Frontiers in Plant Science. 2022
- Meeting the Challenges Facing Wheat Production: The Strategic Research Agenda of the Global Wheat Initiative. Agronomy. 2022
- Meeting the Challenges Facing Wheat Production: The Strategic Research Agenda of the Global Wheat Initiative. Agronomy. 2022
- Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS. Plant Phenomics. 2019
- RepetDB: a unified resource for transposable element references 2019
- Tracing the ancestry of modern bread wheats.. Nature Genetics. 2019
- Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science. 361:7191. 2018
- The IWGSC Data Repository and Wheat Data Resources Hosted at URGI: Overview and Perspectives 2018
- Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data.. Genome Biology. 2018
- Shifting the limits in wheat research and breeding using a fully annotated reference genome.. Science. 2018
- The transcriptional landscape of polyploid wheat.. Science (New York, N.Y.). 2018
- Developing data interoperability using standards: A wheat community use case.. F1000Research. 6:1843-1843. 2017
- Combined Genomic and Genetic Data Integration of Major Agronomical Traits in Bread Wheat (Triticum aestivum L.).. Frontiers in Plant Science. 2017
- Developing data interoperability using standards: A wheat community use case 2017
- Mining Plant Genomic and Genetic Data Using the GnpIS Information System.. Methods in molecular biology (Clifton, N.J.). 2017
- Physical Map of the Short Arm of Bread Wheat Chromosome 3D.. The Plant Genome. 2017
- IWGSC Sequence Repository: Moving towards tools to facilitate data integration for the reference sequence of wheat 2016
- Reconciling the evolutionary origin of bread wheat (Triticum aestivum). 2016
- Towards an open grapevine information system.. Horticulture research. 2016
- transPLANT Resources for Triticeae Genomic Data. The Plant Genome. 2016
- High-throughput physical map anchoring via BAC-pool sequencing. 2015
- A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome.. Science. 2014
- Ancient hybridizations among the ancestral genomes of bread wheat.. Science. 2014
- Genome interplay in the grain transcriptome of hexaploid bread wheat. Science. 2014
- Structural and functional partitioning of bread wheat chromosome 3B. 2014
- GnpIS: an information system to integrate genetic and genomic data from plants and fungi. 2013
- Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. Plant Journal. 2013
- Chado controller: advanced annotation management with a community annotation system. 2012
- TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes. 2012
- Cabomba as a model for studies of early angiosperm evolution. 2011
- A physical map of the 1-gigabase bread wheat chromosome 3B 2008
- Physical mapping in large genomes: accelerating anchoring of BAC contigs to genetic maps through in silico analysis. 2008
- The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. 2007
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book
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chapter
- Wheat Data Integration and FAIRification: IWGSC, GrainGenes, Ensembl and Other Data Repositories. The Barley Genome. 2024
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abstract