selected publications
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article
- Plant pangenomics, current practice and future direction. Agriculture Communications. 2024
- Technological Development and Advances for Constructing and Analyzing Plant Pangenomes. Genome Biology and Evolution. 2024
- Unravelling inversions. Plant Biotechnology Journal. 2024
- A pangenome analysis pipeline provides insights into functional gene identification in rice. Genome Biology. 2023
- Amborella gene presence/absence variation is associated with abiotic stress responses that may contribute to environmental adaptation. New Phytologist. 2022
- Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003. Theoretical and Applied Genetics. 2022
- Machine learning models outperform deep learning models, provide interpretation and facilitate feature selection for soybean trait prediction. BMC Plant Biology. 2022
- Mapping of partial resistance to Phytophthora sojae in soybean PIs using whole-genome sequencing reveals a major QTL. Plant Genome. 2022
- Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. Plant Genome. 2022
- Wheat Panache. The Plant Genome. 2022
- Crop breeding for a changing climate. Theoretical and Applied Genetics. 2021
- The Chicken Pan-Genome Reveals Gene Content Variation and a Promoter Region Deletion in IGF2BP1 Affecting Body Size. Molecular Biology and Evolution. 2021
- Construction and comparison of three reference-quality genome assemblies for soybean. The Plant Journal. 2019
- Advances in Integrating Genomics and Bioinformatics in the Plant Breeding Pipeline. Agriculture. 2018
- Single-Cell Genomic Analysis in Plants. Genes. 2018
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chapter
- Legume pangenome construction using an iterative mapping and assembly approach. Legume Genomics. 2020
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document