selected publications
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article
- DNABERT-based explainable lncRNA identification in plant genome assemblies. Computational and structural biotechnology journal. 2023
- Legume-wide comparative analysis of pod shatter locus PDH1 reveals phaseoloid specificity, high cowpea expression and stress responsive genomic context. The Plant Journal. 2023
- The conservation of gene models can support genome annotation. Plant Genome. 2023
- crosshap. Bioinformatics. 2023
- Copy Number Variation among Resistance Genes Analogues in Brassica napus. Genes. 2022
- Evaluating Plant Gene Models Using Machine Learning. Plants. 2022
- Expanding Gene-Editing Potential in Crop Improvement with Pangenomes. International Journal of Molecular Sciences. 2022
- Genetic and Genomic Resources for Soybean Breeding Research. Plants. 2022
- Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003. Theoretical and Applied Genetics. 2022
- Isolation and Sequencing of Chromosome Arm 7RS of Rye, Secale cereale. International Journal of Molecular Sciences. 2022
- Machine learning models outperform deep learning models, provide interpretation and facilitate feature selection for soybean trait prediction. BMC Plant Biology. 2022
- Pangenomes as a Resource to Accelerate Breeding of Under-Utilised Crop Species. International Journal of Molecular Sciences. 2022
- Pangenomics and Crop Genome Adaptation in a Changing Climate. Plants. 2022
- Wheat Panache. The Plant Genome. 2022
- Daisychain: Search and Interactive Visualisation of Homologs in Genome Assemblies. Agronomy. 2021
- The application of pangenomics and machine learning in genomic selection in plants. Plant Genome. 2021
- INTERMEDIATE CLEAVAGE PEPTIDASE55 Modifies Enzyme Amino Termini and Alters Protein Stability in Arabidopsis Mitochondria. Plant Physiology. 2015
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document
- Local haplotype visualization for trait association analysis with crosshap 2023
- DNABERT-based explainable lncRNA identification in plant genome assemblies 2022
- Not all pathways are the same – unique adaptations to submerged environments emerge from comparative seagrass genomics 2022
- Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003 2021
- Yield is negatively correlated with nucleotide-binding leucine-rich repeat gene content in soybean 2021