selected publications
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article
- Distinct genomic contexts predict gene presence–absence variation in different pathotypes of Magnaporthe oryzae. Genetics. 2024
- High allelic diversity in Arabidopsis NLRs is associated with distinct genomic features. EMBO Reports. 2024
- Majority of the Highly Variable NLRs in Maize Share Genomic Location and Contain Additional Target-Binding Domains. Molecular Plant-Microbe Interactions®. 2024
- Proxiome assembly of the plant nuclear pore reveals an essential hub for gene expression regulation. Nature plants. 2024
- Structure-aware annotation of leucine-rich repeat domains. PLOS Computational Biology. 2024
- Altering Specificity and Autoactivity of Plant Immune Receptors Sr33 and Sr50 Via a Rational Engineering Approach. Molecular Plant-Microbe Interactions®. 2023
- Intraspecific Variation of Transposable Elements Reveals Differences in the Evolutionary History of Fungal Phytopathogen Pathotypes. Genome Biology and Evolution. 2023
- Prediction of effector protein structures from fungal phytopathogens enables evolutionary analyses. Nature microbiology. 2023
- Variation in plant Toll/Interleukin-1 receptor domain protein dependence on ENHANCED DISEASE SUSCEPTIBILITY 1. Plant Physiology. 2023
- Characterization of defense responses against bacterial pathogens in duckweeds lacking EDS1. New Phytologist. 2022
- The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors. BMC Biology. 2022
- Analysis of intraspecies diversity reveals a subset of highly variable plant immune receptors and predicts their binding sites. The Plant Cell. 2021
- Computational Structural Genomics Unravels Common Folds and Novel Families in the Secretome of Fungal Phytopathogen Magnaporthe oryzae. Molecular Plant-Microbe Interactions®. 2021
- Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement. Nature Biotechnology. 2021
- Multiple wheat genomes reveal global variation in modern breeding.. Nature. 588:277-283. 2020
- Convergent Loss of an EDS1/PAD4 Signaling Pathway in Several Plant Lineages Reveals Coevolved Components of Plant Immunity and Drought Response. The Plant Cell. 2020
- Evolution of Plant NLRs: From Natural History to Precise Modifications.. Annual Review of Plant Biology. 2020
- The NLR-Annotator Tool Enables Annotation of the Intracellular Immune Receptor Repertoire.. Plant Physiology. 2020
- The role of transposable elements and DNA damage repair mechanisms in gene duplications and gene fusions in plant genomes.. Current Opinion in Plant Biology. 2019
- Tracing the ancestry of modern bread wheats.. Nature Genetics. 2019
- Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions.. Genome Biology. 2018
- From plant immunity to food security: an interview with Ksenia Krasileva.. BMC Biology. 2018
- An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations.. Genome Research. 2017
- Genetics of a hardy crop.. Nature Biotechnology. 2017
- Genomic innovation for crop improvement. Nature. 2017
- NLR diversity, helpers and integrated domains: making sense of the NLR IDentity.. Current Opinion in Plant Biology. 2017
- Uncovering hidden variation in polyploid wheat.. Proceedings of the National Academy of Sciences of the United States of America. 2017
- An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations.. bioRxiv. 80796. 2016
- Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens.. BMC Biology. 2016
- Heterologous Expression Screens in Nicotiana benthamiana Identify a Candidate Effector of the Wheat Yellow Rust Pathogen that Associates with Processing Bodies.. PLOS ONE. 2016
- Focus issue on plant immunity: from model systems to crop species.. Frontiers in Plant Science. 2015
- The "sensor domains" of plant NLR proteins: more than decoys?. Frontiers in Plant Science. 2015
- Efficient Genome-Wide Detection and Cataloging of EMS-Induced Mutations Using Exome Capture and Next-Generation Sequencing.. The Plant Cell. 2014
- Separating homeologs by phasing in the tetraploid wheat transcriptome. Genome Biology. 2013
- Computational prediction and molecular characterization of an oomycete effector and the cognate Arabidopsis resistance gene.. PLOS Genetics. 2012
- Effector recognition and activation of the Arabidopsis thaliana NLR innate immune receptors.. Cold Spring Harbor symposia on quantitative biology. 2012
- High-throughput genomic sequencing of cassava bacterial blight strains identifies conserved effectors to target for durable resistance.. Proceedings of the National Academy of Sciences of the United States of America. 2012
- Sequence divergent RXLR effectors share a structural fold conserved across plant pathogenic oomycete species.. PLOS Pathogens. 2012
- Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper.. BMC Genomics. 2011
- Computational and biochemical analysis of the Xanthomonas effector AvrBs2 and its role in the modulation of Xanthomonas type three effector delivery.. PLOS Pathogens. 2011
- Global analysis of Arabidopsis/downy mildew interactions reveals prevalence of incomplete resistance and rapid evolution of pathogen recognition.. PLOS ONE. 2011
- Hyaloperonospora arabidopsidis ATR1 effector is a repeat protein with distributed recognition surfaces.. Proceedings of the National Academy of Sciences of the United States of America. 2011
- Activation of an Arabidopsis resistance protein is specified by the in planta association of its leucine-rich repeat domain with the cognate oomycete effector.. The Plant Cell. 2010
- Interference of quorum sensing in Pseudomonas syringae by bacterial epiphytes that limit iron availability.. Environmental Microbiology. 2010
- Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes.. The Plant Cell. 2007
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abstract
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document
- Distinct genomic contexts predict gene presence-absence variation in different pathotypes of a fungal plant pathogen 2023
- High intraspecies allelic diversity inArabidopsisNLR immune receptors is associated with distinct genomic and epigenomic features 2023
- Structure-Aware Annotation of Leucine-rich Repeat Domains 2023
- A draft genome assembly for the heterozygous wild tomato Solanum habrochaites highlights haplotypic structural variations of intracellular immune receptors 2022
- Characterization of EDS1-independent plant defense responses against bacterial pathogens using Duckweed/Pseudomonas pathosystems 2022
- Comparative computational structural genomics highlights divergent evolution of fungal effectors 2022
- Engineering of Sr33 and Sr50 plant immune receptors to alter recognition specificity and autoactivity 2022
- Intraspecific variation of transposable elements reveals differences in the evolutionary history of fungal phytopathogen pathotypes 2022
- Majority of the highly variable NLRs in maize share genomic location and contain additional target-binding domains 2022
- Pseudomonasisolates from ponds populated with duckweed prevent disease caused by pathogenicPseudomonasspecies 2022
- Computational structural genomics unravels common folds and predicted functions in the secretome of fungal phytopathogenMagnaporthe oryzae 2021
- Differential EDS1 requirement for cell death activities of plant TIR-domain proteins 2021
- Evolution of the bread wheat D-subgenome and enriching it with diversity from Aegilops tauschii 2021
- The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors 2021
- Genome and time-of-day transcriptome of Wolffia australiana link morphological extreme minimization with un-gated plant growth 2020
- Intraspecies diversity reveals a subset of highly variable plant immune receptors and predicts their binding sites 2020
- Convergent loss of an EDS1/PAD4 signalling pathway in several plant lineages predicts new components of plant immunity and drought response 2019
- The role of transposable elements and DNA damage repair mechanisms in gene amplification and protein domain shuffling in plant genomes 2019
- Physical and transcriptional organisation of the bread wheat intracellular immune receptor repertoire 2018
- Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions 2017
- In planta expression screens of candidate effector proteins from the wheat yellow rust fungus reveal processing bodies as a pathogen-targeted plant cell compartment 2015