selected publications
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article
- Improving Wheat Grain Yield Genomic Prediction Accuracy Using Historical Data. G3: Genes, Genomes, Genetics. 2025
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Priority actions for Fusarium head blight resistance in durum wheat: Insights from the wheat initiative.
The Plant Genome.
2025
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A Bayesian optimization R package for multitrait parental selection.
The Plant Genome.
2024
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Deep learning methods improve genomic prediction of wheat breeding
2024
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Dissection of the Genetic Basis of Genotype by Environment Interactions for Morphological Traits and Protein Content in Winter Wheat Panel Grown in Morocco and Spain.
Plants.
2024
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Genomic prediction of synthetic hexaploid wheat upon tetraploid durum and diploid Aegilops parental pools.
The Plant Genome.
2024
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Genomic wide association study and selective sweep analysis identify genes associated with improved yield under drought in Turkish winter wheat germplasm.
Scientific Reports.
2024
- Modeling within and between Sub-Genomes Epistasis of Synthetic Hexaploid Wheat for Genome-Enabled Prediction of Diseases. Genes. 2024
- Molecular Markers Help with Breeding for Agronomic Traits of Spring Wheat in Kazakhstan and Siberia. Genes. 2024
- Optimizing Genomic Parental Selection for Categorical and Continuous–Categorical Multi-Trait Mixtures. Genes. 2024
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Pyramiding of transgenic immune receptors from primary and tertiary wheat gene pools improves powdery mildew resistance in the field.
Journal of Experimental Botany.
2024
- Uncovering alleles beneficial for seed characteristics in durum wheat (Triticum durum Desf.) landraces and cultivars. Euphytica. 2024
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Wheat genetic resources have avoided disease pandemics, improved food security, and reduced environmental footprints: A review of historical impacts and future opportunities.
Global Change Biology.
2024
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Development of a Next Generation SNP Genotyping Array for Wheat.
Plant Biotechnology Journal.
2023
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Envirome-wide associations enhance multi-year genome-based prediction of historical wheat breeding data.
G3.
2023
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Genetic Diversity and Genome-Wide Association Study for the Phenology Response of Winter Wheats of North America, Western Asia, and Europe.
Plants.
2023
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Genomic Prediction of Resistance to Tan Spot, Spot Blotch and Septoria Nodorum Blotch in Synthetic Hexaploid Wheat.
International Journal of Molecular Sciences.
2023
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Results from rapid-cycle recurrent genomic selection in spring bread wheat.
G3: Genes, Genomes, Genetics.
2023
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Updated guidelines for gene nomenclature in wheat.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik.
2023
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Bayesian multitrait kernel methods improve multienvironment genome-based prediction.
G3: Genes, Genomes, Genetics.
2022
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Capturing Wheat Phenotypes at the Genome Level.
Frontiers in Plant Science.
2022
- Distribution of alleles related to grain weight and quality in Moroccan and North American wheat landraces and cultivars. Euphytica. 2022
- FRECUENCY OF THE IWA7257-YR78 MARKER ASSOCIATED WITH YELLOW RUST RESISTANCE IN MEXICAN BREAD WHEAT,FRECUENCIA DEL MARCADOR IWA7257-YR78 ASOCIADO CON LA RESISTENCIA A ROYA AMARILLA EN TRIGO HARINERO MEXICANO 2022
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Genome-Wide Association Study for Resistance to Tan Spot in Synthetic Hexaploid Wheat.
Plants.
2022
- Genome-Wide Association Study for Spot Blotch Resistance in Synthetic Hexaploid Wheat. Genes. 2022
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Genome-Wide Association Study of Root-Lesion Nematodes Pratylenchus Species and Crown Rot Fusarium culmorum in Bread Wheat.
Life.
2022
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Genomic variants affecting homoeologous gene expression dosage contribute to agronomic trait variation in allopolyploid wheat.
Nature Communications.
2022
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Selection signatures in the CIMMYT International Elite Spring and Semi‐arid Wheat Yield Trials.
The Plant Genome.
2022
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Sparse kernel models provide optimization of training set design for genomic prediction in multiyear wheat breeding data.
Plant Genome.
2022
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Genetic diversity and agronomic performance of wheat landraces currently grown in Tajikistan.
Crop Science.
2021
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Genome-Wide Association Study of Tan Spot Resistance in a Hexaploid Wheat Collection From Kazakhstan..
Frontiers in Genetics.
11:581214.
2021
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Allelic Variation at Glutenin Loci (Glu-1, Glu-2 and Glu-3) in a Worldwide Durum Wheat Collection and Its Effect on Quality Attributes.
Foods.
2021
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Diversity and Adaptation of Currently Grown Wheat Landraces and Modern Germplasm in Afghanistan, Iran, and Turkey.
Crops.
2021
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Effect of Flowering Time-Related Genes on Biomass, Harvest Index, and Grain Yield in CIMMYT Elite Spring Bread Wheat..
Biology.
2021
- Genome-wide association analysis for arabinoxylan content in common wheat (T. Aestivum L.) flour. Journal of Cereal Science. 2021
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Genomic resources in plant breeding for sustainable agriculture.
Journal of Plant Physiology.
2021
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Harnessing translational research in wheat for climate resilience.
Journal of Experimental Botany.
2021
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Juvenile Heat Tolerance in Wheat for Attaining Higher Grain Yield by Shifting to Early Sowing in October in South Asia.
Genes.
2021
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Genome-Wide Association Mapping and Genomic Prediction of Anther Extrusion in CIMMYT Hybrid Wheat Breeding Program via Modeling Pedigree, Genomic Relationship, and Interaction With the Environment..
Frontiers in Genetics.
11:586687.
2020
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The Effect of Photoperiod Genes and Flowering Time on Yield and Yield Stability in Durum Wheat
2020
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Genome-based prediction of multiple wheat quality traits in multiple years..
The Plant Genome.
13.
2020
- Agronomic performance of durum wheat landraces and modern cultivars and its association with genotypic variation in vernalization response (Vrn-1) and photoperiod sensitivity (Ppd-1) genes. European Journal of Agronomy. 120:126129. 2020
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Genome‐wide association study for spot blotch resistance in Afghan wheat germplasm.
Plant Pathology.
69:1161-1171.
2020
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Disease Resistance Evaluation of Elite CIMMYT Wheat Lines Containing the Coupled Fhb1 and Sr2 Genes..
Plant Disease.
104:2369-2376.
2020
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Allelic Variation at the Vernalization Response (Vrn-1) and Photoperiod Sensitivity (Ppd-1) Genes and Their Association With the Development of Durum Wheat Landraces and Modern Cultivars.
Frontiers in Plant Science.
11:838.
2020
- Development and validation of high-throughput and low-cost STARP assays for genes underpinning economically important traits in wheat.. Theoretical and Applied Genetics. 133:2431-2450. 2020
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Four consistent loci confer adult plant resistance to leaf rust in the durum wheat lines Heller#1 and Dunkler..
Phytopathology.
110:892-899.
2020
- Effect of allele combinations at Ppd-1 loci on durum wheat grain filling at contrasting latitudes.. Journal of Agronomy and Crop Science. 206:64-75. 2020
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Yield and Quality in Purple-Grained Wheat Isogenic Lines.
Agronomy.
10:86.
2020
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Adult Plant Slow Rusting Genes Confer High Levels of Resistance to Rusts in Bread Wheat Cultivars From Mexico
2020
- Comparison of array‐ and sequencing‐based markers for genome‐wide association mapping and genomic prediction in spring wheat. Crop Science. 2020
- Effect of allele combinations at Ppd‐1 loci on durum wheat grain filling at contrasting latitudes. Journal of Agronomy and Crop Science. 2020
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Genome-based prediction of multiple wheat quality traits in multiple years.
Plant Genome.
2020
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Haplotype-Based, Genome-Wide Association Study Reveals Stable Genomic Regions for Grain Yield in CIMMYT Spring Bread Wheat.
Frontiers in Genetics.
2020
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Puroindoline (Pina-D1 and Pinb-D1) and waxy (Wx-1) genes in Iranian bread wheat (Triticum aestivum L.) landraces
2020
- Regularized selection indices for breeding value prediction using hyper-spectral image data. Scientific Reports. 2020
- Relationship between the Lr67 leaf rust resistance gene and the Rht-D1 dwarfing gene of wheat,Relación entre el gen Lr67 de resistencia a roya de la HOJA y el gen Rht-D1 de enanismo del trigo 2020
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SNP markers for low molecular glutenin subunits (LMW-GSs) at the Glu-A3 and Glu-B3 loci in bread wheat.
PLOS ONE.
2020
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The Effect of Photoperiod Genes and Flowering Time on Yield and Yield Stability in Durum Wheat.
Plants.
2020
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Yield and Quality in Purple-Grained Wheat Isogenic Lines.
Agronomy.
2020
- Comparison of array‐ and sequencing‐based markers for genome‐wide association mapping and genomic prediction in spring wheat. Crop Science. 60:211-225. 2020
- Mean Phenotypic and Genotypic data for: Genome-wide association mapping and genomic prediction of anther extrusion in CIMMYT hybrid wheat 2020
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Anther extrusion and its association with Fusarium head blight in CIMMYT wheat germplasm.
Agronomy.
10:47.
2019
- A wheat chromosome 5AL region confers seedling resistance to both tan spot and Septoria nodorum blotch in two mapping populations. Crop Journal. 7:809-818. 2019
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Mapping of Genetic Loci Conferring Resistance to Leaf Rust From Three Globally Resistant Durum Wheat Sources..
Frontiers in Plant Science.
10:1247.
2019
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Multi-environment QTL analysis using an updated genetic map of a widely distributed Seri × Babax spring wheat population.
Molecular Breeding.
39:1-15.
2019
- Identification and mapping of two adult plant leaf rust resistance genes in durum wheat. Molecular Breeding. 39:1-11. 2019
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Genetic Mapping Reveals Large-Effect QTL for Anther Extrusion in CIMMYT Spring Wheat.
Agronomy.
9:407.
2019
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Genetic diversity and linkage disequilibrium using SNP (KASP) and AFLP markers in a worldwide durum wheat (Triticum turgidum L. var durum) collection..
PLOS ONE.
14.
2019
- Genome-wide association studies (GWAS) in wheat 2019
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Genome wide association study of karnal bunt resistance in a wheat germplasm collection from Afghanistan.
International Journal of Molecular Sciences.
20:3124.
2019
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Reduced response diversity does not negatively impact wheat climate resilience.
Proceedings of the National Academy of Sciences of the United States of America.
116:10623-10624.
2019
- Genetic dissection of heat and drought stress QTLs in phenology-controlled synthetic-derived recombinant inbred lines in spring wheat. Molecular Breeding. 39:1-18. 2019
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Hybrid Wheat Prediction Using Genomic, Pedigree, and Environmental Covariables Interaction Models..
The Plant Genome.
12:180051.
2019
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Hyperspectral Reflectance-Derived Relationship Matrices for Genomic Prediction of Grain Yield in Wheat.
G3: Genes, Genomes, Genetics.
9:1231-1247.
2019
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Anther Extrusion and Its Association with Fusarium Head Blight in CIMMYT Wheat Germplasm.
Agronomy.
2019
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Genetic Contribution of Synthetic Hexaploid Wheat to CIMMYT’s Spring Bread Wheat Breeding Germplasm.
Scientific Reports.
2019
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Genetic mapping reveals large-effect QTL for anther extrusion in CIMMYT spring wheat.
Agronomy.
2019
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Genome Wide Association Study of Karnal Bunt Resistance in a Wheat Germplasm Collection from Afghanistan.
International Journal of Molecular Sciences.
2019
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Hybrid wheat prediction using genomic, pedigree, and environmental covariables interaction models.
Plant Genome.
2019
- Identification and mapping of two adult plant leaf rust resistance genes in durum wheat. Molecular Breeding. 2019
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Improving grain yield, stress resilience and quality of bread wheat using large-scale genomics.
Nature Genetics.
2019
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Integrating genomic-enabled prediction and high-throughput phenotyping in breeding for climate-resilient bread wheat.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik.
2019
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Mapping of Genetic Loci Conferring Resistance to Leaf Rust From Three Globally Resistant Durum Wheat Sources
2019
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Multi-environment QTL analysis using an updated genetic map of a widely distributed Seri × Babax spring wheat population.
Molecular Breeding.
2019
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Reduced response diversity does not negatively impact wheat climate resilience.
Proceedings of the National Academy of Sciences of the United States of America.
2019
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Tracking the adoption of bread wheat varieties in Afghanistan using DNA fingerprinting.
BMC Genomics.
2019
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Validation of Candidate Gene-Based Markers and Identification of Novel Loci for Thousand-Grain Weight in Spring Bread Wheat.
Frontiers in Plant Science.
2019
- Application of Genetic and Genomic Tools in Wheat for Developing Countries 2019
- Dissecting the heat stress tolerance QTLome in durum wheat 2019
- Integration of genetics and genomics-based breeding approaches in the CIMMYT Global Wheat Program 2019
- The use of synthetic hexaploid wheat in the CIMMYT Global Wheat Program 2019
- “SpeedGS” to Accelerate Genetic Gain in Spring Wheat 2019
- Resistance to Spot Blotch in Two Mapping Populations of Common Wheat Is Controlled by Multiple QTL of Minor Effects. International Journal of Molecular Sciences. 19:4054. 2018
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Genetic dissection of grain zinc concentration in spring wheat for mainstreaming biofortification in CIMMYT wheat breeding..
Scientific Reports.
8:13526.
2018
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Identification of Novel Quantitative Trait Loci Linked to Crown Rot Resistance in Spring Wheat..
International Journal of Molecular Sciences.
19:2666.
2018
- Validation of Grain Yield QTLs from Soft Winter Wheat Using a CIMMYT Spring Wheat Panel. Crop Science. 58:1964-1971. 2018
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Use of Hyperspectral Reflectance-Derived Relationship Matrices for Genomic Prediction of Grain Yield in Wheat.
bioRxiv.
389825.
2018
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Applications of Machine Learning Methods to Genomic Selection in Breeding Wheat for Rust Resistance..
The Plant Genome.
11:170104.
2018
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Effect of Ppd-A1 and Ppd-B1 allelic variants on grain number and thousand kernel weight of durum wheat and their impact on final grain yield..
Frontiers in Plant Science.
9:888-888.
2018
- Characterization and mapping of leaf rust resistance in four durum wheat cultivars.. PLOS ONE. 13. 2018
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Correction to: Genetic analysis of multi-environmental spring wheat trials identifies genomic regions for locus-specific trade-offs for grain weight and grain number..
Theoretical and Applied Genetics.
131:999-999.
2018
- Relationship between the number of partial resistance genes and the response to leaf rust in wheat genotypes. Chilean Journal of Agricultural Research. 78:400-408. 2018
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Breeding-assisted genomics: Applying meta-GWAS for milling and baking quality in CIMMYT wheat breeding program.
PLOS ONE.
2018
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Genetic dissection of grain zinc concentration in spring wheat for mainstreaming biofortification in CIMMYT wheat breeding.
Scientific Reports.
2018
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Identification and validation of a common stem rust resistance locus in two bi-parental populations
2018
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Identification of Novel Quantitative Trait Loci Linked to Crown Rot Resistance in Spring Wheat.
International Journal of Molecular Sciences.
2018
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Prospects and challenges of applied genomic selection—a new paradigm in breeding for grain yield in bread wheat.
Plant Genome.
2018
- Resistance to Spot Blotch in Two Mapping Populations of Common Wheat Is Controlled by Multiple QTL of Minor Effects. International Journal of Molecular Sciences. 2018
- Breeding for Fusarium Mycotoxin wheat germsplasm at CIMMYT, Mexico 2018
- Characterization of DON resistance QTL on 3BL and 3DL in a wheat mapping population 2018
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Single‐Step Genomic and Pedigree Genotype × Environment Interaction Models for Predicting Wheat Lines in International Environments.
The Plant Genome.
10.
2017
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Strategies for selecting crosses using genomic prediction in two wheat breeding programs.
The Plant Genome.
10.
2017
- Effect of Ppd-1 photoperiod sensitivity genes on dry matter production and allocation in durum wheat. Field Crops Research. 221:358-367. 2017
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Genome-wide association mapping and genome-wide prediction of anther extrusion in CIMMYT spring wheat.
Euphytica.
213:73.
2017
- Increasing genetic gains in spring wheat through physiological genetics and breeding 2017
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Genetic analysis of morpho-physiological traits and yield components in F
2 partial diallel crosses of bread wheat (Triticum aestivum L.),Análisis genético de caracteres morfo-fisiológicos y componentes de rendimiento en cruzamientos dialélicos parciales en F2 de trigo pan (Triticum aestivum L.). Revista Facultad Nacional de Agronomia Medellin. 2017 -
Genome-wide association mapping and genome-wide prediction of anther extrusion in CIMMYT spring wheat.
Euphytica.
2017
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Strategies for selecting crosses using genomic prediction in two wheat breeding programs.
Plant Genome.
2017
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Applications of Genomic Selection in Breeding Wheat for Rust Resistance..
Methods of Molecular Biology.
1659:173-182.
2017
- Wheat molecular breeding laboratory 2017
- dsDNA Fluorescent Quantification and Genotyping in Common Wheat by FLUOstar System. Acta Agronomica Sinica. 43:947. 2017
- Wheat quality improvement at CIMMYT and the use of genomic selection on it.. Applied and Translational Genomics. 11:3-8. 2016
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Mining Centuries Old In situ Conserved Turkish Wheat Landraces for Grain Yield and Stripe Rust Resistance Genes..
Frontiers in Genetics.
7:201-201.
2016
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Identification of Earliness Per Se Flowering Time Locus in Spring Wheat through a Genome-Wide Association Study.
Crop Science.
56:2962-2972.
2016
- Association analysis of resistance to cereal cyst nematodes (Heterodera avenae) and root lesion nematodes (Pratylenchus neglectus and P. thornei) in CIMMYT advanced spring wheat lines for semi-arid conditions. Breeding Science. 66:692-702. 2016
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Breeding Value of Primary Synthetic Wheat Genotypes for Grain Yield..
PLOS ONE.
11.
2016
-
Stem rust resistance in a geographically diverse collection of spring wheat lines collected from across Africa.
Frontiers in Plant Science.
7:973-973.
2016
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Genomic prediction for grain zinc and iron concentrations in spring wheat.
Theoretical and Applied Genetics.
129:1595-1605.
2016
- Effect of Ppd-1 genes on durum wheat flowering time and grain filling duration in a wide range of latitudes. The Journal of Agricultural Science. 154:612-631. 2016
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Changes in durum wheat root and aerial biomass caused by the introduction of the Rht-B1b dwarfing allele and their effects on yield formation.
Plant and Soil.
403:291-304.
2016
- Association analysis of resistance to cereal cyst nematodes (Heterodera avenae) and root lesion nematodes (Pratylenchus neglectus and P. thornei) in CIMMYT advanced spring wheat lines for semi-arid conditions. Breeding Science. 2016
- Characterization of Fusarium head blight resistance in a CIMMYT synthetic-derived bread wheat line. Euphytica. 2016
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Genomic selection for processing and end-use quality traits in the CIMMYT spring bread wheat breeding program.
Plant Genome.
2016
-
QTL characterization of Fusarium head blight resistance in CIMMYT bread wheat line Soru#1.
PLOS ONE.
2016
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Sources of the highly expressed wheat bread making (wbm) gene in CIMMYT spring wheat germplasm and its effect on processing and bread-making quality.
Euphytica.
2016
- Wheat quality improvement at CIMMYT and the use of genomic selection on it. Applied and Translational Genomics. 2016
- Breeding Strategy and use of HTPG in the CIMMYT Global Wheat Program (GWP) 2016
- Breeding for wheat germplasm with enhanced FHB resistance and reduced DON content at CIMMYT 2016
- CIMMYT Wheat Molecular Genetics : laboratory protocols and applications to wheat breeding 2016
- Utilizing genomics and phenomics in CIMMYT wheat breeding 2016
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Genetic mapping of the Cre8 locus for resistance against cereal cyst nematode (Heterodera avenae Woll.) in wheat.
Molecular Breeding.
2015
- Characterization of Chinese wheat germplasm for resistance to Fusarium head blight at CIMMYT, Mexico. Euphytica. 2014
- Resistance of winter wheat to Heterodera filipjevi in Turkey. Turkish Journal of Agriculture and Forestry. 2014
- Resistance to leaf rust in a set of durum wheat cultivars and landraces in Spain 2014
- Identification and characterization of international Fusarium head blight screening nurseries of wheat at CIMMYT, Mexico. European Journal of Plant Pathology. 2013
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Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.).
BMC Genomics.
2010
-
Wheat genetic resources enhancement by the International Maize and Wheat Improvement Center (CIMMYT).
Genetic Resources and Crop Evolution.
55:1095-1140.
2008
-
Wheat genetic resources enhancement by the International Maize and Wheat Improvement Center (CIMMYT).
Genetic Resources and Crop Evolution.
2008
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Bringing wild relatives back into the family: recovering genetic diversity in CIMMYT improved wheat germplasm.
Euphytica.
149:289-301.
2006
-
book
- Development and characterization of international maize and wheat improvement center (CIMMYT) germplasm for Fusarium head blight resistance 2013
- QTLs mapping of durable adult plant resistance to stem rust Ug99 of wheat in population PBW343/MUU 2011
- QTLs mapping of durable adult plant resistance to stem rust Ug99 of wheat in population PBW343/MUU 2011
- QTLs mapping of durable adult plant resistance to stem rust Ug99 of wheat in population PBW343/MUU 2011
- Use of consensus maps to differentiate QTL for leaf and stripe rust resistance 2011
- Use of consensus maps to differentiate QTL for leaf and stripe rust resistance 2011
- Use of consensus maps to differentiate QTL for leaf and stripe rust resistance 2011
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abstract
- Accelerating simultaneous genetic gain in wheat for grain yield and other relevant traits to enhance productivity, nutrition, and farmers income 2022
- Response to early generation genomic selection for grain yield in wheat 2022
- A QUALITY CONTROL MARKER PANEL FOR SPRING BREAD WHEAT GERMPLASM 2019
- DIVERSIFICATION OF DURUM WHEAT INDUSTRIAL END-USES THROUGH THE GENETIC MODIFICATION OF ITS GLUTENIN COMPOSITION AND GRAIN TEXTURE 2019
- ENHANCING APHID RESISTANCE IN CIMMYT’S BREAD WHEAT GERMPLASM 2019
- EXTENDING THE FRONTIERS OF GENOMIC SELECTION, TRAIT GENETIC ARCHITECTURE AND GENOMIC FINGERPRINTING IN CIMMYT’S BREAD WHEAT BREEDING PROGRAM 2019
- FREQUENCY AND ROLE OF YR78 IN RECENT CIMMYT BREAD WHEAT 2019
- GENETIC CONTRIBUTION OF SYNTHETIC HEXAPLOID WHEAT TO CIMMYT SPRING WHEAT GERMPLASM AND BREEDING IMPLICATIONS 2019
- GENOME-WIDE ASSOCIATION MAPPING REVEALS NOVEL QTL HOTSPOTS FOR YIELD AND COMPONENT TRAITS IN BREAD WHEAT (TRITICUM AESTIVUM L.) GROWN UNDER RAINFED AND SUPPLEMENTAL IRRIGATION CONDITIONS 2019
- HOW PPD-1 GENES AFFECT PHENOLOGY AND YIELD FORMATION OF DURUM WHEAT UNDER CONTRASTING LATITUDES 2019
- INCORPORATING GENOME-WIDE ASSOCIATION MAPPING RESULTS INTO GENOMIC PREDICTION MODELS FOR GRAIN YIELD AND YIELD STABILITY IN CIMMYT SPRING BREAD WHEAT 2019
- SELECTION SIGNATURES IN CIMMYT’S INTERNATIONAL ELITE SPRING AND SEMI-ARID WHEAT YIELD TRIALS 2019
- TRACKING THE ADOPTION OF BREAD WHEAT VARIETIES IN AFGHANISTAN USING DNA FINGERPRINTING 2019
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